1:22:13Applied Computational Genomics - 01- Intro to UNIX
A 82-minute video from Aaron Quinlan: “Applied Computational Genomics - 01- Intro to UNIX”.
Aaron Quinlan
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1:22:13
1:18:44Applied Computational Genomics - 01- The Human Genome
A 79-minute video from Aaron Quinlan: “Applied Computational Genomics - 01- The Human Genome”.
1:13:16Applied Computational Genomics - 02- Pattern Matching in the Human Genome
A 73-minute video from Aaron Quinlan: “Applied Computational Genomics - 02- Pattern Matching in the Human Genome”.
1:20:55Applied Computational Genomics - 02- UNIX commands continued.
A 81-minute video from Aaron Quinlan: “Applied Computational Genomics - 02- UNIX commands continued.”.
1:12:56Applied Computational Genomics - 03- Genetic Variation
A 73-minute video from Aaron Quinlan: “Applied Computational Genomics - 03- Genetic Variation”.
1:19:29Applied Computational Genomics - 03- Introduction to R
A 79-minute video from Aaron Quinlan: “Applied Computational Genomics - 03- Introduction to R”.
1:17:10Applied Computational Genomics - 04 - DNA Sequencing Technologies, Sequencing Error, & FASTQ format.
A 77-minute video from Aaron Quinlan: “Applied Computational Genomics - 04 - DNA Sequencing Technologies, Sequencing Error, & FASTQ format.”.
1:19:04Applied Computational Genomics - 04 - Dataframes, Precision/Accuracy, and Basic RNA-seq
A 79-minute video from Aaron Quinlan: “Applied Computational Genomics - 04 - Dataframes, Precision/Accuracy, and Basic RNA-seq”.
1:20:55Applied Computational Genomics - 05 - Poisson Processes in Biology
A 81-minute video from Aaron Quinlan: “Applied Computational Genomics - 05 - Poisson Processes in Biology”.
1:09:56Applied Computational Genomics - 05 - Sequence Mapping and Alignment: Methods and Considerations.
A 70-minute video from Aaron Quinlan: “Applied Computational Genomics - 05 - Sequence Mapping and Alignment: Methods and Considerations.”.
1:11:52Applied Computational Genomics - 06 - SAM, BAM, CRAM format.
A 72-minute video from Aaron Quinlan: “Applied Computational Genomics - 06 - SAM, BAM, CRAM format.”.
1:11:51Applied Computational Genomics - 06 - Uncertainty in bulk RNA-seq
A 72-minute video from Aaron Quinlan: “Applied Computational Genomics - 06 - Uncertainty in bulk RNA-seq”.
1:17:26Applied Computational Genomics - 07 - DNA sequence mapping and alignment
A 77-minute video from Aaron Quinlan: “Applied Computational Genomics - 07 - DNA sequence mapping and alignment”.
1:07:23Applied Computational Genomics - 07 - Detecting Genetic Variation Part 1.
A 67-minute video from Aaron Quinlan: “Applied Computational Genomics - 07 - Detecting Genetic Variation Part 1.”.
1:02:41Applied Computational Genomics - 08 - Detecting Genetic Variation Part 2.
A 63-minute video from Aaron Quinlan: “Applied Computational Genomics - 08 - Detecting Genetic Variation Part 2.”.
1:01:30Applied Computational Genomics - 09 - Variant Calling Format (VCF) and Hardy-Weinberg Equilibrium.
A 62-minute video from Aaron Quinlan: “Applied Computational Genomics - 09 - Variant Calling Format (VCF) and Hardy-Weinberg Equilibrium.”.
57:49Applied Computational Genomics - 10 - VCF Annotation
A 58-minute video from Aaron Quinlan: “Applied Computational Genomics - 10 - VCF Annotation”.
1:09:17Applied Computational Genomics - 11 - What is Structural Variation and how do we detect it?
A 69-minute video from Aaron Quinlan: “Applied Computational Genomics - 11 - What is Structural Variation and how do we detect it?”.
1:18:10Applied Computational Genomics - 12 - Genome Annotation Formats
A 78-minute video from Aaron Quinlan: “Applied Computational Genomics - 12 - Genome Annotation Formats”.
1:20:30Applied Computational Genomics - 13 - An introduction to bedtools.
A 80-minute video from Aaron Quinlan: “Applied Computational Genomics - 13 - An introduction to bedtools.”.
1:17:15Applied Computational Genomics - 14 - Real-world analyses with bedtools
A 77-minute video from Aaron Quinlan: “Applied Computational Genomics - 14 - Real-world analyses with bedtools”.
35:29Applied Computational Genomics - 15 - Monte Carlo analyses with bedtools
A 35-minute video from Aaron Quinlan: “Applied Computational Genomics - 15 - Monte Carlo analyses with bedtools”.
59:47Applied Computational Genomics - 20 - A Quick Overview of Supervised Machine Learning
A 60-minute video from Aaron Quinlan: “Applied Computational Genomics - 20 - A Quick Overview of Supervised Machine Learning”.
51:19Applied Computational Genomics - BEDtools for Monte Carlo Overlap Enrichment Experiments
A 51-minute video from Aaron Quinlan: “Applied Computational Genomics - BEDtools for Monte Carlo Overlap Enrichment Experiments”.
1:16:57Applied Computational Genomics - Genome Annotation Concepts
A 77-minute video from Aaron Quinlan: “Applied Computational Genomics - Genome Annotation Concepts”.
1:17:30Applied Computational Genomics - awk and bioawk
A 78-minute video from Aaron Quinlan: “Applied Computational Genomics - awk and bioawk”.
59:37Guest Lecturer: Susan Holmes, Stanford. Intro to expectation maximization and its applications.
A 60-minute video from Aaron Quinlan: “Guest Lecturer: Susan Holmes, Stanford. Intro to expectation maximization and its applications.”.
1:03:17SLLOBS - Lecture 12 - Poisson distributions in biology
A 63-minute video from Aaron Quinlan: “SLLOBS - Lecture 12 - Poisson distributions in biology”.
59:32SLLOBS - Lecture 13 - Gaussian Processes and QQ Plots
A 60-minute video from Aaron Quinlan: “SLLOBS - Lecture 13 - Gaussian Processes and QQ Plots”.
52:01SLLOBS Lecture 03 - Data Frames and crude RNA-seq analysis
A 52-minute video from Aaron Quinlan: “SLLOBS Lecture 03 - Data Frames and crude RNA-seq analysis”.
47:28SLLOBS Lecture 05 - Data Visualization with ggplot2
A 47-minute video from Aaron Quinlan: “SLLOBS Lecture 05 - Data Visualization with ggplot2”.
1:02:08SLLOBS Lecture 08 - Intro to Probability with Coin Tosses
Intro
A 62-minute video from Aaron Quinlan: “SLLOBS Lecture 08 - Intro to Probability with Coin Tosses”.